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Commit d06a64b7 by simetk
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added simplified usage package

parent 80b16c56
Inline Side-by-side
Showing with 5836 additions and 43 deletions
DB.txt 0 → 100644
fileCount: 4969
got here
root: hasti
root: rattl
root: currenc
root: few
root: daniel
root: proclam
root: june
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>>ozon
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>>ibrd
>>ilo
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>>icao
>>ifc
>>wmo
>>fao
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root: roof
root: gestur
root: night
root: requir
root: coffin
root: lamb
root: lucki
root: vertic
root: sharp
root: newli
root: palm
root: garden
root: teaspoon
root: ha
root: engrav
root: april
root: passag
root: tangl
root: grope
root: expos
root: quarrel
root: enquir
root: war
root: seem
root: remaind
root: steward
root: asia
root: monument
root: accent
root: railroad
root: henc
root: interven
root: new
root: aught
root: practis
root: liberti
root: coordin
root: blossom
root: napoleon
root: enact
root: sugar
root: pilot
root: pocket
root: steer
root: squeez
root: deserv
root: no
root: simplic
root: ground
root: role
root: modesti
root: york
root: alarm
root: drill
root: emigr
root: domin
root: canal
root: impuls
root: congreg
root: atmospher
root: morri
root: cloak
root: queen
root: calmli
root: tax
root: anoth
root: goddess
root: intent
root: overview
root: inconveni
root: earnestli
root: omit
root: closer
root: glove
root: saxon
root: spoke
root: bolt
root: aristocrat
root: compris
root: pierc
root: socialist
root: deceiv
root: clap
root: babe
root: habit
root: nurs
root: search
root: submiss
root: banish
root: essenti
root: beggar
root: u
root: persian
root: bit
root: object
root: peasant
root: tomb
root: imperfect
root: orchard
root: erect
root: nan
root: bodili
root: teas
root: satin
root: complex
root: crust
root: retort
root: rid
root: fuel
root: recov
root: belgium
root: compli
root: sire
root: flood
root: empti
root: discharg
root: globe
root: slaughter
root: dispers
root: seaman
root: loom
root: quest
root: welcom
root: close
root: plenti
root: grant
root: cuba
root: immens
root: revel
root: laps
root: speci
root: bout
root: diplomat
root: imit
root: appreci
root: shrug
root: risk
root: disregard
root: cab
root: eyelid
root: lectur
root: delic
root: simpli
root: thirti
root: wreath
root: warmli
root: mild
root: decad
root: up
root: straighten
root: year
root: extinct
root: spaniard
root: thank
root: slaveri
root: like
root: tool
root: repuls
root: luncheon
root: skull
root: troubl
root: davi
root: overtak
root: shower
root: mantl
root: smart
root: empir
root: wrist
root: most
root: wrap
root: admiss
root: stori
root: nativ
root: injur
root: bright
root: shave
root: diminish
root: answer
root: departur
root: realiti
root: latest
root: voluntari
root: sorrow
root: outlin
root: crystal
root: chanceri
root: eldest
root: elect
root: taylor
root: breathless
root: institut
root: pea
root: interview
root: keen
root: progress
root: nichola
root: pour
root: guy
root: on
root: actual
root: chin
root: foreign
root: speaker
root: honest
root: protect
root: nee
root: apparatu
root: wind
root: carrier
root: boil
root: invent
root: mutual
root: slave
root: assert
root: ass
root: grand
root: prepar
root: casual
root: dc
root: wood
root: slender
root: peer
root: suspicion
root: personag
root: inn
root: tens
root: dens
root: vivid
root: nay
root: devour
root: larg
root: crumb
root: captiv
root: crew
root: accident
root: horizon
root: index
root: babi
root: minor
root: bark
root: crisi
root: cottag
root: healthi
root: leaf
root: mingl
root: brute
root: mademoisel
root: best
root: discu
root: steel
root: rage
root: judgment
root: tray
root: y
root: chocol
root: aggress
root: crash
root: badli
root: sole
root: tree
root: writ
root: satisfi
root: planet
root: conduct
root: class
root: headquart
root: top
root: lower
root: plagu
root: formid
root: vehement
root: humbl
root: beseech
root: destitut
root: walk
root: freedom
root: snake
root: anim
root: fortifi
root: reliev
root: consent
root: glide
root: patent
root: distress
root: edg
root: treacher
root: gospel
root: doubtless
root: degre
root: tract
root: suitabl
root: civil
root: lawyer
root: energi
root: van
root: tenant
root: spectat
root: current
root: marin
root: humil
root: ham
root: rib
root: proce
root: occas
root: streak
root: dome
root: afternoon
root: visibl
root: eat
root: god
root: nw
root: crouch
root: negro
root: japan
root: startl
root: applaus
root: assent
root: perfum
root: fix
root: drift
root: slightli
root: innoc
root: timber
root: surgeon
root: deputi
root: nigh
root: britain
root: consult
root: porter
root: snatch
root: rector
root: cautiou
root: pale
root: emancip
root: school
root: tent
root: shoe
root: width
root: avoid
root: blake
root: hide
root: sensat
root: enabl
root: bruce
root: damp
root: rather
root: pleasur
root: femal
root: spectacl
root: lunch
root: shatter
root: piou
root: approv
root: hinder
root: septemb
root: sneer
root: better
root: hurri
root: offer
root: outward
root: first
root: polici
root: advertis
root: vinegar
root: hardship
root: midst
root: minist
root: confer
root: onc
root: bosom
root: still
root: smash
root: fork
root: outer
root: den
root: fourth
root: prefac
root: conspir
root: rebellion
root: power
root: unhappi
root: philosophi
root: fireplac
root: brandi
root: illus
root: void
root: torch
root: trail
root: wit
root: support
root: dainti
root: throb
root: furi
root: commenc
root: pink
root: otherwis
root: make
root: assail
root: smoke
root: heel
root: speak
root: clock
root: unnatur
root: avow
root: interfer
root: t
root: main
root: essenc
root: discuss
root: crippl
root: vi
root: molli
root: tank
root: manhood
root: propheci
root: drug
root: end
root: vine
root: greater
root: legisl
root: plainli
root: peel
root: confess
root: subsequ
root: armchair
root: amount
root: proposit
root: sleev
root: autumn
root: ruin
root: lent
root: clergi
root: mysteri
root: em
root: whisper
root: engag
root: glow
root: leather
root: influenc
root: indiffer
root: digest
root: si
root: destin
root: now
root: bill
root: stair
root: such
root: aris
root: comparison
root: brood
root: transport
root: spin
root: remedi
root: repel
root: sun
root: rightli
root: plot
root: sure
root: stiff
root: ant
root: elizabeth
root: necess
root: mexico
root: oppos
root: examin
root: contriv
root: phrase
root: uncomfort
root: tramp
root: defend
root: net
root: despot
root: almost
nsquared time:5.299987
total time:6.564752
DBscan
No preview for this file type
DBscan.c
......@@ -2,16 +2,13 @@
#include <stdlib.h>
#include <dirent.h>
#include <time.h>
#define RIVSIZE 5000
#define RIVSIZE 50000
#define CACHESIZE 0
#define NONZEROS 2
#define EPSILON 0.8
#define MINPOINTS 15
#define EPSILON 0.95
#define MINPOINTS 20
#define UNCHECKED 0
#define NOISE -1
#define MINSIZE 3000
#include "RIVtools.h"
......@@ -21,18 +18,18 @@ struct DBnode{
int indexCount;
int status;
}*DBset;
void DBdive(int C, int i);
void directoryToL2s(char *rootString, sparseRIV** fileRIVs, int *fileCount);
int main(int argc, char *argv[]){
clock_t begintotal = clock();
int fileCount = 0;
lexOpen("/run/media/etcart/UUI/lexicon");
lexOpen("/home/drbob/Documents/lexicon8-50");
sparseRIV *fileRIVs = (sparseRIV*) malloc(1*sizeof(sparseRIV));
char rootString[2000];
if(argc <2){
if(argc <2){
printf("give me a directory");
return 1;
}
......@@ -41,7 +38,7 @@ int main(int argc, char *argv[]){
directoryToL2s(rootString, &fileRIVs, &fileCount);
printf("fileCount: %d\n", fileCount);
sparseRIV* fileRIVs_slider = fileRIVs;
sparseRIV* fileRIVs_stop = fileRIVs+fileCount;
DBset = malloc(fileCount*sizeof(struct DBnode));
......@@ -53,33 +50,31 @@ int main(int argc, char *argv[]){
(*DBset_slider).indexCount = 0;
(*DBset_slider++).status = 0;
fileRIVs_slider++;
}
free(fileRIVs);
clock_t beginnsquared = clock();
float cosine;
denseRIV baseDense;
baseDense.values = malloc(RIVSIZE*sizeof(int));
for(int i=0; i<fileCount; i++){
memset(baseDense.values, 0, RIVSIZE*sizeof(int));
baseDense.values = addS2D(baseDense.values, DBset[i].RIV);
baseDense.magnitude = DBset[i].RIV.magnitude;
for(int j=i+1; j<fileCount; j++){
cosine = cosCompare(baseDense, DBset[j].RIV);
if(cosine>EPSILON){
DBset[i].indexes = realloc(DBset[i].indexes, (DBset[i].indexCount+1)*sizeof(int));
DBset[i].indexes[DBset[i].indexCount++] = j;
DBset[j].indexes = realloc(DBset[j].indexes, (DBset[j].indexCount+1)*sizeof(int));
DBset[j].indexes[DBset[j].indexCount++] = i;
}
}
}
......@@ -94,32 +89,32 @@ int main(int argc, char *argv[]){
DBset[i].status = C;
DBdive(C, i);
}
clock_t endnsquared = clock();
double time = (double)(endnsquared - beginnsquared) / CLOCKS_PER_SEC;
printf("\nnsquared time:%lf\n\n", time);
clock_t endtotal = clock();
double time_spent = (double)(endtotal - begintotal) / CLOCKS_PER_SEC;
printf("total time:%lf\n\n", time_spent);
return 0;
}
void DBdive(int C, int i){
printf("starting at: %s\n", DBset[i].RIV.name);
printf("root: %s\n", DBset[i].RIV.name);
struct DBnode *DBnet = malloc(sizeof(struct DBnode));
DBnet[0] = DBset[i];
int nodeCount = 1;
for(int j=0; j<nodeCount; j++){
for(int k=0; k<DBnet[j].indexCount;k++){
int index = DBnet[j].indexes[k];
if(DBset[index].status) continue;
if(DBset[index].status>0) continue;
printf(">>%s\n", DBset[index].RIV.name);
DBset[index].status = C;
if(DBset[index].indexCount> MINPOINTS){
DBnet = realloc(DBnet, (nodeCount+1)*sizeof(struct DBnode));
printf("diving into: %s\n", DBset[index].RIV.name);
DBnet[nodeCount++] = DBset[index];
}
}
......@@ -132,30 +127,28 @@ void directoryToL2s(char *rootString, sparseRIV** fileRIVs, int *fileCount){
char pathString[2000];
DIR *directory;
struct dirent *files = 0;
if(!(directory = opendir(rootString))){
printf("location not found, %s\n", rootString);
return;
}
while((files=readdir(directory))){
if(*(files->d_name) == '.') continue;
if(files->d_type == DT_DIR){
strcpy(pathString, rootString);
strcat(pathString, files->d_name);
strcat(pathString, "/");
directoryToL2s(pathString, fileRIVs, fileCount);
}
denseRIV temp = lexPull(files->d_name);
if(*temp.frequency >2000){
if(*temp.frequency >MINSIZE){
(*fileRIVs) = (sparseRIV*)realloc((*fileRIVs), ((*fileCount)+1)*sizeof(sparseRIV));
(*fileRIVs)[(*fileCount)] = normalize(temp, 500);
strcpy((*fileRIVs)[(*fileCount)].name, files->d_name);
(*fileCount)++;
}
......
RIVLower.h
#ifndef RIVLOWER_H_
#define RIVLOWER_H_
#include <stdio.h>
......@@ -313,9 +314,9 @@ void lexOpen(char* lexName){
strcpy(RIVKey.lexName, lexName);
/* open a slot at least large enough for worst case handling of
* sparse to dense conversion. may be enlarged by filetoL2 functions */
signal(11, signalSecure);
for(int i=1; i<20; i++){
signal(i, signalSecure);
}
/* open a slot for a cache of dense RIVs, optimized for frequent accesses */
......
RIVLower.h.save 0 → 100644
#ifndef RIVLOWER_H_
#define RIVLOWER_H_
#include <stdio.h>
#include <stdlib.h>
#include <string.h>
#include <signal.h>
#include <unistd.h>
#include <math.h>
#include <sys/stat.h>
#include <sys/types.h>
/* RIVSIZE macro defines the dimensionality off the RIVs we will use
* 25000 is the standard, but can be redefined specifically
*/
#ifndef RIVSIZE
#define RIVSIZE 25000
#endif
#if RIVSIZE<0
#error "RIVSIZE must be a positive number (preferably a large positive)"
#endif
/* NONZeros macro defines the number of non-zero values that will be generated
* for any level one (barcode) RIV. 2 is simple and lightweight to begin
*/
#ifndef NONZEROS
#define NONZEROS 2
#endif
#if NONZEROS%2 || NONZEROS<1
#error "NONZEROS must be an even, greater than 0 number"
#endif
/* CACHESIZE macro defines the number of RIVs the system will cache.
* a larger cache means more memory consumption, but will also be significantly
* faster in aggregation and reading applications. doesn't affect systems
* that do not use lexpull/push
*/
#ifndef CACHESIZE
#define CACHESIZE 20
#endif
#if CACHESIZE<0
#error "CACHESIZE cannot be a negative number"
#endif
/* the size of the tempBlock used in consolidation and implicit RIVs */
#define TEMPSIZE 3*RIVSIZE
/* the sparseRIV is a RIV form optimized for RIVs that will be mostly 0s
* as this is often an ideal case, it is adviseable as the default
* unless we are doing long term RIV aggregation.
* specifically, a sparseRIV contains a pair of arrays,
* containing locations and values, where pairs are found in like array
* indices.
*/
typedef struct{
char name[100];
int *values;
int *locations;
size_t count;
int frequency;
double magnitude;
int boolean;
int contextSize;
}sparseRIV;
/* the denseRIV is a RIV form optimized for overwhelmingly non-0 vectors
* this is rarely the case, but its primary use is for performing vector
* math, as comparisons and arithmetic between vectors are ideally
* performed between sparse and dense (hetero-arithmetic)
*/
typedef struct{
char name[100];
int* values;
int* frequency;
double magnitude;
int cached;
int *contextSize;
}denseRIV;
/*RIVKey, holds global variables used under the hood, primarily for the lexicon
* it also holds a "temp block" that will be used by the dense to sparse
* conversion and implicit RIV aggregation
*/
struct RIVData{
int h_tempBlock[TEMPSIZE];
int tempSize;
char lexName[255];
denseRIV RIVCache[CACHESIZE];
}static RIVKey;
/* lexOpen is called to "open the lexicon", setting up for later calls to
* lexPush and lexPull. if the lexicon has not been opened before calls
* to these functions, their behavior can be unpredictable, most likely crashing
*/
void lexOpen();
/* lexClose should always be called after the last lex push or lex pull call
* if the lexicon is left open, some vector data may be lost due to
* un-flushed RIV cache
*/
void lexClose();
/*consolidateD2S takes a denseRIV value-set input, and returns a sparse RIV with
* all 0s removed. it does not automatically carry metadata, which must be assigned
* to a denseRIV after the fact. often denseRIVs are only temporary, and don't
* contain any metadata
*/
sparseRIV consolidateD2S(int *denseInput); //#TODO fix int*/denseRIV confusion
/* makeSparseLocations must be called repeatedly in the processing of a
* file to produce a series of locations from the words of the file
* this produces an "implicit" RIV which can be used with the mapI2D function
* to create a denseRIV.
*/
void makeSparseLocations(unsigned char* word, int *seeds, size_t seedCount);
/* fLexPush pushes the data contained in a denseRIV out to a lexicon file,
* saving it for long-term aggregation. function is called by "lexPush",
* which is what users should actually use. lexPush, unlike fLexPush,
* has cache logic under the hood for speed and harddrive optimization
*/
int fLexPush(denseRIV RIVout);
/* flexPull pulls data directly from a file and converts it (if necessary)
* to a denseRIV. function is called by "lexPull" which is what users
* should actually use. lexPull, unlike FlexPull, has cache logic under
* the hood for speed and harddrive optimization
*/
denseRIV fLexPull(FILE* lexWord);
/* creates a standard seed from the characters in a word, hopefully unique */
int wordtoSeed(unsigned char* word);
/* mapI2D maps an "implicit RIV" that is, an array of index values,
* arranged by chronological order of generation (as per makesparseLocations)
* it assigns, in the process of mapping, values according to ordering
*/
int* mapI2D(int *locations, size_t seedCount);
/* highly optimized method for adding vectors. there is no method
* included for adding D2D or S2S, as this system is faster-enough
* to be more than worth using
*/
int* addS2D(int* destination, sparseRIV input);
/*
sparseRIV consolidateI2SIndirect(int *implicit, size_t valueCount);
sparseRIV consolidateI2SDirect(int *implicit, size_t valueCount);
* consolidate I2S is temporarily deprecated. may be brought back.
* in tandem they are much faster, but less careful with RAM */
/* caheDump flushes the RIV cache out to relevant files, backing up all
* data. this is called by the lexClose and signalSecure functions
*/
int cacheDump();
/* adds all elements of an implicit RIV (a sparseRIV represented without values)
* to a denseRIV. used by the file2L2 functions in aggregating a document vector
*/
int* addI2D(int* destination, int* locations, size_t seedCount);
/* allocates a denseRIV filled with 0s
*/
denseRIV denseAllocate();
/* redefines signal behavior to protect cached data against seg-faults etc*/
void signalSecure(int signum);
/* begin definitions */
int* addS2D(int* destination, sparseRIV input){// #TODO fix destination parameter vs calloc of destination
int *locations_slider = input.locations; int *values_slider = input.values;
int *locations_stop = locations_slider+input.count;
/* apply values at an index based on locations */
while(locations_slider<locations_stop){
destination[*locations_slider] += *values_slider;
locations_slider++;
values_slider++;
}
return destination;
}
int* mapI2D(int *locations, size_t valueCount){// #TODO fix destination parameter vs calloc of destination
int *destination = (int*)calloc(RIVSIZE,sizeof(int));
int *locations_slider = locations;
int *locations_stop = locations_slider+valueCount;
/*apply values +1 or -1 at an index based on locations */
while(locations_slider<locations_stop){
destination[*locations_slider] +=1;
locations_slider++;
destination[*locations_slider] -= 1;
locations_slider++;
}
return destination;
}
int* addI2D(int* destination, int *locations, size_t valueCount){// #TODO fix destination parameter vs calloc of destination
int *locations_slider = locations;
int *locations_stop = locations_slider+valueCount;
/*apply values +1 or -1 at an index based on locations */
while(locations_slider<locations_stop){
destination[*locations_slider] +=1;
locations_slider++;
destination[*locations_slider] -= 1;
locations_slider++;
}
return destination;
}
/*
sparseRIV consolidateI2SIndirect(int *implicit, size_t valueCount){
int *denseTemp = mapI2D(implicit, valueCount);
sparseRIV sparseOut = consolidateD2S(denseTemp);
free(denseTemp);
return sparseOut;
}
sparseRIV consolidateI2SDirect(int *implicit, size_t valueCount){
sparseRIV sparseOut;
int *locationsTemp = RIVKey.h_tempBlock+RIVSIZE;
int *valuesTemp = RIVKey.h_tempBlock+2*RIVSIZE;
sparseOut.count = 0;
int add = 1;
int found;
for(int i=0; i<valueCount; i++){
found = 0;
for(int j=0; j<sparseOut.count; j++){
if(implicit[i] == locationsTemp[j]){
valuesTemp[i] += add;
add *= -1;
found = 1;
}
}
if(!found){
locationsTemp[sparseOut.count] = implicit[i];
valuesTemp[sparseOut.count] = add;
sparseOut.count++;
add*= -1;
}
}
sparseOut.locations = (int*)malloc(2*sparseOut.count*sizeof(int));
sparseOut.values = sparseOut.locations+sparseOut.count;
memcpy(sparseOut.locations, locationsTemp, sparseOut.count*sizeof(int));
memcpy(sparseOut.values, valuesTemp, sparseOut.count*sizeof(int));
return sparseOut;
}*/
sparseRIV consolidateD2S(int *denseInput){
sparseRIV output;
output.count = 0;
/* key/value pairs will be loaded to a worst-case sized temporary slot */
int* locations = RIVKey.h_tempBlock+RIVSIZE;
int* values = locations+RIVSIZE;
int* locations_slider = locations;
int* values_slider = values;
for(int i=0; i<RIVSIZE; i++){
/* act only on non-zeros */
if(denseInput[i]){
/* assign index to locations */
*(locations_slider++) = i;
/* assign value to values */
*(values_slider++) = denseInput[i];
/* track size of forming sparseRIV */
output.count++;
}
}
/* a slot is opened for the locations/values pair */
output.locations = (int*) malloc(output.count*2*sizeof(int));
if(!output.locations){
printf("memory allocation failed"); //*TODO enable fail point knowledge and security
}
/* copy locations values into opened slot */
memcpy(output.locations, locations, output.count*sizeof(int));
output.values = output.locations + output.count;
/* copy values into opened slot */
memcpy(output.values, values, output.count*sizeof(int));
return output;
}
void lexOpen(char* lexName){
/* RIVKey.I2SThreshold = sqrt(RIVSIZE);*/ //deprecate?
struct stat st;
if (stat(lexName, &st) == -1) {
mkdir(lexName, 0777);
}
strcpy(RIVKey.lexName, lexName);
/* open a slot at least large enough for worst case handling of
* sparse to dense conversion. may be enlarged by filetoL2 functions */
signal(11, signalSecure);
/* open a slot for a cache of dense RIVs, optimized for frequent accesses */
memset(RIVKey.RIVCache, 0, sizeof(denseRIV)*CACHESIZE);
}
void lexClose(){
if(cacheDump()){
puts("cache dump failed, some lexicon data was lost");
}
}
int wordtoSeed(unsigned char* word){
int i=0;
int seed = 0;
while(*word){
/* left-shift 5 each time *should* make seeds unique to words
* this means letters are taken as characters counted in base 32, which
* should be large enough to hold all english characters plus a few outliers
* */
seed += (*(word))<<(i*5);
word++;
i++;
}
return seed;
}
void makeSparseLocations(unsigned char* word, int *locations, size_t count){
locations+=count;
srand(wordtoSeed(word));
int *locations_stop = locations+NONZEROS;
while(locations<locations_stop){
/* unrolled for speed, guaranteed to be an even number of steps */
*locations = rand()%RIVSIZE;
locations++;
*locations = rand()%RIVSIZE;
locations++;
}
return;
}
int fLexPush(denseRIV RIVout){
char pathString[200] = {0};
/* word data will be placed in a (new?) file under the lexicon directory
* in a file named after the word itself */
sprintf(pathString, "%s/%s", RIVKey.lexName, RIVout.name);
FILE *lexWord = fopen(pathString, "wb");
if(!lexWord){
printf("lexicon push has failed for word: %s\nconsider cleaning inputs", pathString);
return 1;
}
sparseRIV temp = consolidateD2S(RIVout.values);
if(temp.count<(RIVSIZE/2)){
/* smaller stored as sparse vector */
fwrite(&temp.count, 1, sizeof(size_t), lexWord);
fwrite(RIVout.frequency, 1, sizeof(int), lexWord);
fwrite(RIVout.contextSize, 1, sizeof(int), lexWord);
fwrite(&RIVout.magnitude, 1, sizeof(float), lexWord);
fwrite(temp.locations, temp.count, sizeof(int), lexWord);
fwrite(temp.values, temp.count, sizeof(int), lexWord);
// printf("%s, writing as sparse, frequency: %d", RIVout.name, *RIVout.frequency);
}else{
/* saturation is too high, better to store dense */
/* there's gotta be a better way to do this */
temp.count = 0;
fwrite(&temp.count, 1, sizeof(size_t), lexWord);
fwrite(RIVout.frequency, 1, sizeof(int), lexWord);
fwrite(RIVout.contextSize, 1, sizeof(int), lexWord);
fwrite(&RIVout.magnitude, 1, sizeof(float), lexWord);
fwrite(RIVout.values, RIVSIZE, sizeof(int), lexWord);
// printf("%s, writing as dense, frequency: %d", RIVout.name, *RIVout.frequency);
}
fclose(lexWord);
free(RIVout.values);
free(temp.locations);
return 0;
}
denseRIV fLexPull(FILE* lexWord){
denseRIV output = denseAllocate();
size_t typeCheck;
int flag = 0;
/* get metadata for vector */
flag+= fread(&typeCheck, 1, sizeof(size_t), lexWord);
flag+= fread(output.frequency, 1, sizeof(int), lexWord);
flag+= fread(output.contextSize, 1, sizeof(int), lexWord);
flag+= fread(&(output.magnitude), 1, sizeof(float), lexWord);
/* first value stored is the value count if sparse, and 0 if dense */
if (typeCheck){
/* pull as sparseVector */
sparseRIV temp;
/* value was not 0, so it's the value count */
temp.count = typeCheck;
temp.locations = (int*)malloc(temp.count*2*sizeof(int));
temp.values = temp.locations+temp.count;
flag+= fread(temp.locations, temp.count, sizeof(int), lexWord);
flag+=fread(temp.values, temp.count, sizeof(int), lexWord);
addS2D(output.values, temp);
free(temp.locations);
}else{
/* typecheck is thrown away, just a flag in this case */
flag += fread(output.values, RIVSIZE, sizeof(int), lexWord);
}
output.cached = 0;
return output;
}
void signalSecure(int signum){
if(cacheDump()){
puts("cache dump failed, some lexicon data lost");
}else{
puts("cache dumped successfully");
}
signal(signum, SIG_DFL);
exit(1);
}
int cacheDump(){
int flag = 0;
denseRIV* cache_slider = RIVKey.RIVCache;
denseRIV* cache_stop = RIVKey.RIVCache+CACHESIZE;
while(cache_slider<cache_stop){
if((*cache_slider).cached){
flag += fLexPush(*cache_slider);
}
else{
}
cache_slider++;
}
return flag;
}
denseRIV denseAllocate(){
/* allocates a 0 vector */
denseRIV output;
output.values = (int*)calloc(RIVSIZE+2, sizeof(int));
/* for compact memory use, frequency is placed immediately after values */
output.frequency = output.values+RIVSIZE;
output.contextSize = output.frequency+1;
output.magnitude = 0;
output.cached = 0;
return output;
}
/*TODO add a simplified free function*/
#endif
RIVPACK1/RIVread.c 0 → 100644
#include <stdio.h>
#include <stdlib.h>
#include <time.h>
#define CACHESIZE 15000
#define RIVSIZE 50000
#define NONZEROS 8
#include <setjmp.h>
#include <signal.h>
#include "../RIVet/RIVtools.h"
#include <sys/stat.h>
#include <sys/types.h>
#include <unistd.h>
#include <dirent.h>
#include <error.h>
void fileGrind(FILE* textFile);
void addS2Ds(denseRIV *denseSet, sparseRIV additive, int RIVCount);
int checkDupe(denseRIV* RIVSet, char* word, int wordCount);
void directoryGrind(char *rootString);
void readdirContingency(int sigNumber);
jmp_buf readdirRecov;
int main(int argc, char *argv[]){
clock_t begintotal = clock();
lexOpen("/home/drbob/Documents/lexicon8-50");
char pathString[1000];
strcpy(pathString, argv[1]);
strcat(pathString, "/");
struct stat st = {0};
if(stat(pathString, &st) == -1) {
return 1;
}
directoryGrind(pathString);
clock_t endtotal = clock();
double time_spent = (double)(endtotal - begintotal) / CLOCKS_PER_SEC;
printf("total time:%lf\n\n", time_spent);
lexClose();
return 0;
}
void addS2Ds(denseRIV *denseSet, sparseRIV additive, int RIVCount){
denseRIV *denseSet_slider = denseSet;
denseRIV *dense_stop = denseSet+RIVCount;
while(denseSet_slider<dense_stop){
addS2D((*denseSet_slider).values, additive);
*(denseSet_slider->contextSize) += additive.frequency;
denseSet_slider++;
}
}
int checkDupe(denseRIV* RIVSet, char* word, int wordCount){
denseRIV* RIVStop = RIVSet+wordCount;
while(RIVSet<RIVStop){
if(!strcmp(word, RIVSet->name)){
return 1;
}
RIVSet++;
}
return 0;
}
void directoryGrind(char *rootString){
char pathString[2000];
DIR *directory;
struct dirent *files = 0;
if(!(directory = opendir(rootString))){
printf("location not found, %s\n", rootString);
return;
}
while((files=readdir(directory))){
if(setjmp(readdirRecov)){
continue;
}
//printf("reclen: %d, d_name pointer: %p, firstDigit, %d", files->d_reclen,files->d_name,*(files->d_name));
while(*(files->d_name)=='.'){
files = readdir(directory);
}
//signal(SIGSEGV, signalSecure);
if(files->d_type == DT_DIR){
strcpy(pathString, rootString);
strcat(pathString, files->d_name);
strcat(pathString, "/");
directoryGrind(pathString);
}
strcpy(pathString, rootString);
strcat(pathString, files->d_name);
printf("%s\n", pathString);
FILE *input = fopen(pathString, "r+");
if(input){
fileGrind(input);
fclose(input);
}
}
}
void fileGrind(FILE* textFile){
sparseRIV aggregateRIV = fileToL2Clean(textFile);
fseek(textFile, 0, SEEK_SET);
int wordCount = 0;
denseRIV *RIVArray = (denseRIV*)malloc(aggregateRIV.frequency*sizeof(denseRIV));
char word[200];
while(fscanf(textFile, "%99s", word)){
if(feof(textFile)) break;
if(!(*word))continue;
if(!isWordClean((char*)word)){
continue;
}
if(checkDupe(RIVArray, word, wordCount)){
continue;
}
RIVArray[wordCount] = lexPull(word);
if(!*((RIVArray[wordCount].name))) break;
*(RIVArray[wordCount].frequency)+= 1;;
//printf("%s, %d, %d\n", RIVArray[wordCount].name, *(RIVArray[wordCount].frequency), *thing);
wordCount++;
}
//printf("%d\n", wordCount);
addS2Ds(RIVArray, aggregateRIV, wordCount);
denseRIV* RIVArray_slider = RIVArray;
denseRIV* RIVArray_stop = RIVArray+wordCount;
while(RIVArray_slider<RIVArray_stop){
lexPush(*RIVArray_slider);
RIVArray_slider++;
}
free(RIVArray);
free(aggregateRIV.locations);
}
void readdirContingency(int sigNumber){
puts("readdir segfaulted, trying to recover");
longjmp(readdirRecov, 1);
}
RIVPACK1/runscriptUb.sh 0 → 100644
clean(){
while [ "$1" ]; do
if [ -d "$1" ]; then
clean "$1"/*
else
python shittyballs.py "$1"
./RIVread cleanbooks/
# ./RIVread1 cleanbooks/
./RIVread2 cleanbooks/
#./RIVread3 cleanbooks/
#./RIVread4 cleanbooks/
./RIVread5 cleanbooks/
./RIVread6 cleanbooks/
rm -r cleanbooks/
fi
shift
done
}
clean ../bookCleaner/books/*
RIVPACK1/shittyballs.py 0 → 100644
import requests
import re
import string
import os
import sys
from subprocess import call
import nltk
from nltk.corpus import wordnet as wn
import pdb
from nltk.stem import PorterStemmer
def adverbFix(word):
if not nltk.pos_tag(word)[0][1] == 'RB':
return word
adjective = word[:-2]
if not nltk.pos_tag(word)[0][1] == 'JJ':
return word;
FILE = open("lexicon/" + word, "w")
FILE.write("2" + temp)
FILE.close()
FILE = open("lexicon/" + adjective, "w")
FILE.write("1")
FILE.close()
return adjective
def strip(word):
for suffix in ['ing', 'ly', 'ed', 'ious', 'ies', 'ive', 'es', 's', 'ment']:
if word.endswith(suffix):
return word[:-len(suffix)]
return word
def cleanWord(word):
#if(len(word) == 0):
#print("\n\n***************\n\n***************\n\n***************\n\n***************\n\n***************\n\n***************\n\n***************\n\n***************\n\n***************\n\n***************\n\n***************\n\n***************\n\n***************\n\n***************\n\n***************")
word = word.lower();
regex = re.compile('[^a-z]+')
word = regex.sub('', word)
#print(word)
return word
def fileCheck(word):
try:
#print("trying")
wordFile = open("lexicon/{}".format(word), "r")
code = int(wordFile.read(1))
except:
#print("file does not exist")
return 0
#print("fileCode{}".format(code))
if code == 2:
word = wordFile.read()
#print("file flipped to: " + word)
wordFile.close()
return word
elif code == 1:
#print("file accepted: " + word)
wordFile.close()
return word
elif code == 0:
wordFile.close()
return -1
def morphyTest(word):
morphyTemp = wn.morphy(word)
if not morphyTemp:
return 0
return morphyTemp;
blacklist = ["a", "an", "the", "so", "as", "how",
"i", "me", "we", "they", "you", "it", "he", "she",
"but", "have", "had",
"for", "by", "in", "out", "as", "not"
"be", "were", "was", "am", "are", "is",
"mr", "mrs", "mr", "and"]
word = {}
ps = PorterStemmer()
sourceString = sys.argv[1]
cutDirectories = sourceString.split('/')[-1]
pathString = cutDirectories.split('.')[0]
pathString = "cleanbooks/" + pathString + "clean/"
print(sourceString + "\n")
if not os.path.exists('cleanbooks'):
os.makedirs('cleanbooks')
# if not os.path.exists('lexicon'):
# os.makedirs('lexicon')
if not os.path.exists(pathString):
os.makedirs(pathString)
#call(["python", "blacklist.py"])
i=0
skip = 1
with open(sourceString, 'U') as fileIn:
text = fileIn.read()
for paragraph in text.split(2*os.linesep):
if not paragraph:
continue
elif "*** START OF " in paragraph or "*END THE SMALL PRINT" in paragraph:
skip = 0
continue
elif "*** END OF " in paragraph:
fileIn.close()
sys.exit()
elif "End of Project Gutenberg's" in paragraph:
fileIn.close()
sys.exit()
elif "End of the Project Gutenberg" in paragraph:
fileIn.close()
sys.exit()
if not skip:
cleanString = ''
i += 1
fileOut = open("{}{}.txt".format(pathString, i), "w")
for line in paragraph.split(os.linesep):
for tempWord in line.split():
word=cleanWord(tempWord)
if not word:
continue
# temp = fileCheck(word)
#
# if temp == -1:
# continue
# if temp == 0:
temp = morphyTest(word)
if temp:
stem = ps.stem(temp)
if stem and not stem in blacklist:
cleanString = cleanString + ' ' + stem
#if temp == 0:
# catchAll(word)
cleanString = cleanString + os.linesep
if len(cleanString.split(' ')) > 10:
fileOut.write(cleanString)
fileOut.close()
else:
fileOut.close()
os.remove("{}{}.txt".format(pathString, i))
i -= 1
if skip==1:
print(sourceString + " was badly parsed, no output");
RIVcull
No preview for this file type
RIVcullbooks.c
......@@ -17,7 +17,7 @@ int main(int argc, char *argv[]){
int fileCount = 0;
sparseRIV *fileRIVs = (sparseRIV*) malloc(1*sizeof(sparseRIV));
char rootString[2000];
if(argc <2){
if(argc <2){
printf("give me a directory");
return 1;
}
......@@ -62,7 +62,7 @@ int main(int argc, char *argv[]){
if(remove((*comparators_slider).name)){
printf(" well shit");
}
(*comparators_slider).boolean = 0;
(*comparators_slider).boolean = 0;
thing++;
}
......
RIVlexcompare.c
......@@ -15,7 +15,7 @@ void directoryToL2s(char *rootString, sparseRIV** fileRIVs, int *fileCount);
int main(int argc, char *argv[]){
clock_t begintotal = clock();
int fileCount = 0;
lexOpen("/home/drbob/Documents/lexicon");
lexOpen("/home/drbob/Documents/lexicon2-25");
sparseRIV *fileRIVs = (sparseRIV*) malloc(1*sizeof(sparseRIV));
char rootString[2000];
if(argc <2){
......
output.txt
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